Unfortunately I can't help you, but I'm wondering if you've found a replacement tray in the meantime. I have exactly the same problem. Unfortunately mine is completely rusted through. My Transit has been due a MOT since last month.
If I were you, I'd treat yours with rust converter (e.g. Brunox), then spray zinc on it, and then maybe spray black. Make sure you take a close look at the wheel arch underneath, as the corrosion from the battery is probably continuing there. At least in my case, the wheel arch is also completely through.